Editor's Guidelines

What editors do at AAAI

AAAI uses a double-blind peer review model. In the journal’s described workflow, the Editor-in-Chief (and designated editors) perform an initial screening to confirm scope fit and baseline quality, then assign at least two independent reviewers, and finally make an editorial decision after evaluating reviewer reports. 

Editors are stewards of the scientific record

Your primary obligation is to publish work that is accurate, ethically conducted, and clearly reported—based on scholarly merit and transparent editorial judgment. 

Core principles for editorial decision-making

  • Merit-based decisions: Evaluate manuscripts based on scientific quality and relevance—not on authors’ geography, identity, beliefs, or institutional prestige. 
  • Consistency: Apply the same standards to similar submissions and document deviations when justified.
  • Transparency: Ensure journal processes and expectations are clearly communicated and followed. 
  • Integrity first: Address ethics concerns promptly (plagiarism, authorship disputes, data integrity, COI, consent and approvals). 
  • Confidentiality: Protect manuscript content and identities in the double-blind process. 

Initial screening

Initial screening ensures that reviewers spend time on manuscripts that are genuinely within scope and have a realistic potential to contribute to the field. The AAAI peer review description states that the Editor-in-Chief checks the overall fit, including format and length, clarity, and research methods, before reviewer assignment. 

Screening checklist

Scope and readership fit Confirm the manuscript aligns with AAAI’s asthma, allergy, immunology, and related clinical/biomedical focus. If the topic is off-scope, desk-reject quickly with a respectful explanation and (when possible) a suggestion of a more suitable outlet.
Minimum quality threshold Assess whether the study question, methods, and conclusions are coherent. For clinical papers, check if patient safety, approvals/consent statements, and outcomes reporting appear credible.
Double-blind requirements AAAI asks authors to submit a Title Page and a separate blinded manuscript with no author details. If identities appear in the blinded file (authors, institutions, self-citations phrased as “we previously…”), request correction before review. 
Plagiarism and overlap checks AAAI indicates plagiarism screening is used across its workflows (via iThenticate in author guidance). If overlap is substantial or suspicious, pause peer review and escalate to ethics handling. 
Conflicts of interest at intake Identify potential editorial conflicts (same institution, recent co-authorship, personal relationship, direct competitor disputes). If conflicted, transfer handling to a non-conflicted editor immediately. 

Fast decisions are part of good editorial service

A timely desk decision is better than a slow review for a manuscript that clearly cannot be accepted. It respects authors and protects reviewer time.

Managing double-blind peer review

AAAI describes a double-blind peer review approach and a standard decision set that includes: no modifications, minor modifications, major modifications, or rejection. Editors should manage review in a way that is fair, efficient, and evidence-driven.

Selecting reviewers

  • Match expertise: Choose reviewers with direct subject-matter knowledge and appropriate methodological competence.
  • Avoid conflicts: Exclude reviewers with personal, financial, or academic conflicts (recent collaborators; direct competitors with ongoing disputes).
  • Diversity improves rigor: When possible, select reviewers from varied institutions and geographic settings to reduce groupthink.
  • Maintain confidentiality: ICMJE notes that editors should make clear to reviewers that manuscripts and associated material are confidential. 

Guidance to reviewers

Set clear expectations: what to evaluate, how to structure feedback, how to separate “must-fix” issues from optional suggestions, and how to avoid unprofessional language. Remind reviewers that the goal is to improve scholarship, not to “win” an argument.

Handling reviewer reports

  • Check usefulness: If a report is brief, non-specific, or biased, request an additional review.
  • Do not outsource the decision: Reviewer recommendations inform—but do not replace—the editor’s independent judgment.
  • Resolve contradictions: If reviewers disagree substantially, interpret evidence and (if needed) seek a third reviewer or statistical review.

Writing clear editorial decisions

Decision letters should be respectful, specific, and actionable. They should explain the editorial logic in plain language and point authors to the most important revisions. COPE’s editor guidance emphasizes editor accountability and appropriate editorial handling of content and processes. 

Decision templates (recommended structure)

1) Outcome statement State the outcome and category: Accept, Minor Revision, Major Revision, or Reject. Use the same categories consistently. 
2) Editorial summary Provide a short paragraph describing the manuscript’s contribution and the main weaknesses.
3) “Must address” items List required changes (methods clarity, ethics statements, data integrity, analysis corrections, missing citations, presentation fixes).
4) “Nice to address” items Optional improvements: extra discussion context, language edits, additional limitations, figure clarity.
5) Next steps and timeline Explain how to submit a rebuttal letter and marked manuscript; clarify expectations for point-by-point responses and revision quality.

Respectful tone is not optional

Editors should model professional conduct. Publishing ethics guidance emphasizes respectful, non-discriminatory treatment of all parties. 

Handling ethics and integrity issues

Ethical oversight is part of editorial work. If a concern is raised at any stage, pause the process when needed, gather information, and follow established ethics guidance. COPE provides structured editor guidance and workflows for editorial best practice, and ICMJE describes responsibilities related to confidentiality and peer review conduct. 

Common scenarios and editor actions

  • Plagiarism or excessive overlap: Request explanation and revisions, or reject if severe; document the basis for action. 
  • Authorship dispute: Pause review; request written confirmation from all authors; escalate to the institution if unresolved. (Editors are encouraged to implement contributorship policies.) 
  • Undisclosed conflicts of interest: Require disclosure; consider additional review or editorial reassignment; assess whether interpretation is compromised. 
  • Ethics approval/consent missing: Request documentation or reject if ethical requirements are not met; protect patient privacy.
  • Image/data manipulation concerns: Request original data files and explanation; seek specialist review where appropriate. 

Be aware of legal and rights-sensitive issues

Editorial handling can involve considerations like copyright and libel/defamation risks. The journal’s legacy withdrawal-policy text references legal requirements and editorial awareness in decision-making contexts. 

Special issues and guest editors

AAAI provides structured guidance for special issues: proposals should align with the journal scope, and guest editors/lead guest editors are expected to manage review and revision steps while following journal instructions and ethical standards. 

Minimum expectations for guest editors

  • Scope alignment: Propose topics within AAAI scope and with genuine reader interest. 
  • Review integrity: Avoid conflicts, maintain confidentiality, and ensure competent review coverage.
  • Decision rationale: Accept/reject decisions must be supported with reasons (not preferences). 
  • Coordination with the journal: Work closely with AAAI editorial staff and follow journal policies during review and production. 

Professional conduct and editor well-being

Editorial work can be intense. Good practice is to set boundaries, delegate appropriately, and avoid “always-on” expectations while maintaining timely handling. WAME’s editor responsibility guidance highlights respect for the journal’s constituents (readers, authors, reviewers, and human subjects) and promotes self-correction in science. 

  • Be responsive, not reactive: When conflicts arise, slow down and document.
  • Avoid coercive behavior: Never pressure authors to cite irrelevant work.
  • Protect reviewer goodwill: Keep requests reasonable; thank reviewers; avoid repeated urgent chasing unless needed.

Frequently asked questions

What decision categories does AAAI use?

The journal’s peer review policy describes decision options including: no modifications, minor modifications, major modifications, or rejection. 

How do we preserve the double-blind process?

Ensure authors provide a Title Page and a separate blinded manuscript with no author details; check that identities do not appear in the blinded file. 

What if I have a conflict of interest with a submission?

Reassign the manuscript immediately to a non-conflicted editor and avoid involvement. Editor best-practice guidance emphasizes managing competing interests and maintaining integrity. 

What guidance should we give reviewers about confidentiality?

ICMJE notes that editors should clearly instruct reviewers to keep manuscripts and associated material confidential. 

What standards should editors follow in general?

Widely used guidance includes COPE’s Code of Conduct and Best Practice Guidelines for Journal Editors and the Principles of Transparency and Best Practice in Scholarly Publishing (hosted by DOAJ).